If I were put in charge of making a true-to-the-comic adaptation of the original Young Justice, I do think there's one change I'd make:

I'd ditch the "Batman has a rule against revealing secret identities" angle and instead root that subplot entirely in Tim's personal need to keep his superhero and civilian lives separate through compartmentalization. That'd make Tim's personal arc more strongly about finding a place among his friends where he feels truly comfortable being himself, gradually realizing that "Robin" and "Tim Drake" are both masks, one he wears for Bruce and the other he wears for Jack.

Initially with the rest of YJ he puts on another mask, "Rob," the leader, the responsible one, the stick-in-the-mud but the one everyone can rely on, basically his best attempt at play-acting the role he thinks Dick took in the Teen Titans. But over time he sees the others growing into themselves and becoming more genuine with each other, and he wants that, but he struggles to let himself have it because it goes against everything that kept him safe as a child, that helped him earn Robin's wings, that got him on the team in the first place.

I just think that'd fit his arc in the story a little better.